Variant report

Variant	rs13003754
Chromosome Location	chr2:21329821-21329822
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11124434	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11682662	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11683495	0.90[EUR][1000 genomes]
rs11688672	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12470574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12471982	0.85[ASN][1000 genomes]
rs12477767	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12618519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12619256	0.82[EUR][1000 genomes]
rs12997825	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13010526	0.81[EUR][1000 genomes]
rs13019377	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13022408	0.88[EUR][1000 genomes]
rs1400713	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2030195	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2048933	0.80[EUR][1000 genomes]
rs2048934	0.80[EUR][1000 genomes]
rs312945	0.94[ASN][1000 genomes]
rs312974	0.88[ASN][1000 genomes]
rs312976	0.88[ASN][1000 genomes]
rs34054060	0.91[EUR][1000 genomes]
rs34144010	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34464539	0.84[EUR][1000 genomes]
rs35112647	0.90[EUR][1000 genomes]
rs35168234	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35750610	0.88[EUR][1000 genomes]
rs4574146	0.82[EUR][1000 genomes]
rs6749313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7557098	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7567650	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs97458	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21327600-21330000	Weak transcription	HepG2	liver
2	chr2:21328200-21330000	Weak transcription	Liver	Liver

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