Variant report

Variant	rs2030195
Chromosome Location	chr2:21401291-21401292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11124434	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11682662	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11683495	0.93[EUR][1000 genomes]
rs11688672	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11690364	0.83[EUR][1000 genomes]
rs12470574	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12471982	0.95[ASN][1000 genomes]
rs12477767	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12618519	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12619256	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs12997825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13003754	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13010526	0.87[EUR][1000 genomes]
rs13019377	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13022408	0.97[EUR][1000 genomes]
rs1400713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1914457	0.83[EUR][1000 genomes]
rs2048933	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2048934	1.00[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs312974	0.83[ASN][1000 genomes]
rs312976	0.83[ASN][1000 genomes]
rs34054060	0.94[EUR][1000 genomes]
rs34144010	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34464539	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35112647	0.87[EUR][1000 genomes]
rs35168234	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4387830	0.85[EUR][1000 genomes]
rs4574146	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6749313	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7557098	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7567650	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873728	chr2:21250914-21460786	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21399400-21404600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr2:21399600-21404800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr2:21400200-21401600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr2:21400200-21402400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr2:21400600-21401800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:21400800-21402200	Weak transcription	Brain Substantia Nigra	brain
7	chr2:21401200-21401600	Enhancers	Brain Hippocampus Middle	brain

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