Variant report

Variant	rs11713552
Chromosome Location	chr3:155135036-155135037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155125953..155128553-chr3:155134009..155136555,2	MCF-7	breast:
2	chr3:155134212..155136487-chr3:155137053..155139235,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11706749	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11715278	0.83[ASN][1000 genomes]
rs12487150	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12493778	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12496803	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13066178	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13081656	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13100169	0.81[ASN][1000 genomes]
rs35424673	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4345113	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4679744	0.81[ASN][1000 genomes]
rs4680171	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4680173	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680174	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4680175	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4680176	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680177	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680178	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6440985	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6762452	0.92[EUR][1000 genomes]
rs6794214	0.94[EUR][1000 genomes]
rs6807784	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6807961	0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7612603	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7615026	0.81[ASN][1000 genomes]
rs7619730	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7627097	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9841365	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155131000-155135400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:155131000-155138800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:155131200-155136000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:155133200-155135600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr3:155133600-155136400	Enhancers	HMEC	breast
6	chr3:155133800-155135200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:155133800-155135400	Enhancers	NHDF-Ad	bronchial
8	chr3:155134000-155135200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr3:155134000-155135600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr3:155134000-155136000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr3:155134000-155136000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:155134000-155136000	Enhancers	NHEK	skin
13	chr3:155134000-155136400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr3:155134200-155135200	Enhancers	Placenta	Placenta
15	chr3:155134200-155135200	Enhancers	HSMM	muscle
16	chr3:155134200-155135200	Enhancers	NH-A	brain
17	chr3:155134200-155135200	Enhancers	NHLF	lung
18	chr3:155134200-155135200	Enhancers	Osteobl	bone
19	chr3:155134600-155135400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr3:155135000-155135800	Enhancers	A549	lung
21	chr3:155135000-155136600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:155135000-155138200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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