Variant report

Variant	rs7619730
Chromosome Location	chr3:155119179-155119180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC104472.1-3	chr3:155119118-155119280	NONHSAT092834

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11706749	0.89[EUR][1000 genomes]
rs11713552	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11715278	0.91[JPT][hapmap]
rs11928089	0.90[JPT][hapmap]
rs12487150	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12493778	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12496803	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12696031	0.82[JPT][hapmap]
rs13066178	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13081656	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13083852	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs13100169	0.82[JPT][hapmap]
rs35424673	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4345113	0.95[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4630984	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs4680171	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4680172	0.95[CEU][hapmap];0.91[JPT][hapmap]
rs4680173	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680174	0.86[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680175	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4680176	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4680177	0.95[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6440985	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6762452	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6794214	0.95[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6807784	0.91[CEU][hapmap];0.81[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6807961	0.91[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7612603	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7615026	0.82[JPT][hapmap]
rs7627097	0.91[CEU][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9823946	0.83[JPT][hapmap]
rs9841365	0.91[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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