Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11706749	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11713552	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12487150	0.93[EUR][1000 genomes]
rs12493778	0.86[EUR][1000 genomes]
rs12496803	0.89[EUR][1000 genomes]
rs13066178	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13081656	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35424673	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4345113	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4680173	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4680174	0.87[EUR][1000 genomes]
rs4680175	0.91[EUR][1000 genomes]
rs4680176	0.89[EUR][1000 genomes]
rs4680177	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6440985	0.84[EUR][1000 genomes]
rs6762452	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6794214	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6807784	0.86[EUR][1000 genomes]
rs6807961	0.86[EUR][1000 genomes]
rs7619730	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7627097	0.86[EUR][1000 genomes]
rs9841365	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155105600-155114400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search: