Variant report
| Variant | rs6762452 |
|---|---|
| Chromosome Location | chr3:155115586-155115587 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:155114656..155117033-chr3:155119025..155122004,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000243518 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11706749 | 0.89[EUR][1000 genomes] |
| rs11713552 | 0.92[EUR][1000 genomes] |
| rs12487150 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12493778 | 0.90[EUR][1000 genomes] |
| rs12496803 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs13066178 | 0.92[EUR][1000 genomes] |
| rs13081656 | 0.92[EUR][1000 genomes] |
| rs35424673 | 0.94[EUR][1000 genomes] |
| rs4345113 | 0.94[EUR][1000 genomes] |
| rs4680171 | 0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4680173 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs4680174 | 0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs4680175 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4680176 | 0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs4680177 | 0.90[EUR][1000 genomes] |
| rs6440985 | 0.89[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6794214 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6807784 | 0.91[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6807961 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs7612603 | 0.84[EUR][1000 genomes] |
| rs7619730 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7627097 | 0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9841365 | 0.90[EUR][1000 genomes];0.80[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv999994 | chr3:154579254-155175303 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| 2 | nsv532664 | chr3:154588346-155162615 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 3 | nsv1000753 | chr3:154848433-155207022 | Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| 4 | nsv536773 | chr3:154848433-155207022 | Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
