Variant report

Variant	rs12487150
Chromosome Location	chr3:155137064-155137065
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:155135726..155137467-chr3:155146155..155148179,2	MCF-7	breast:
2	chr3:155134212..155136487-chr3:155137053..155139235,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11706749	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11713552	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11715278	0.85[ASN][1000 genomes]
rs11928089	0.81[ASN][1000 genomes]
rs12493778	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12496803	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12696031	0.81[ASN][1000 genomes]
rs13066178	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13081656	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13100169	0.83[ASN][1000 genomes]
rs35424673	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4345113	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4524323	0.81[ASN][1000 genomes]
rs4679744	0.83[ASN][1000 genomes]
rs4680171	0.93[EUR][1000 genomes]
rs4680173	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4680174	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4680175	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680176	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4680177	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4680178	0.82[ASN][1000 genomes]
rs6440985	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6762452	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6794214	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6807784	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6807961	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7612603	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7615026	0.83[ASN][1000 genomes]
rs7619730	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7627097	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9841365	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv877679	chr3:155128968-155204939	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:155131000-155138800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:155135000-155138200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:155135200-155138000	Weak transcription	Osteobl	bone
4	chr3:155135400-155138800	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:155135600-155137600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:155136000-155141400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:155136400-155138600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:155136400-155141200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:155136600-155138200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr3:155136600-155141600	Weak transcription	Fetal Brain Male	brain
11	chr3:155136600-155141800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr3:155136600-155142400	Weak transcription	Fetal Brain Female	brain
13	chr3:155136800-155139000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:155136800-155141800	Weak transcription	Brain Germinal Matrix	brain
15	chr3:155137000-155141400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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