Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10002337	0.83[EUR][1000 genomes]
rs10004896	0.83[EUR][1000 genomes]
rs10007379	0.83[EUR][1000 genomes]
rs10028766	0.87[EUR][1000 genomes]
rs10520266	0.80[EUR][1000 genomes]
rs11133026	0.86[ASN][1000 genomes]
rs11724216	0.83[ASN][1000 genomes]
rs12651065	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13110635	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13110863	0.80[EUR][1000 genomes]
rs13111991	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13113162	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13119610	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2332799	0.84[EUR][1000 genomes]
rs4235203	0.83[EUR][1000 genomes]
rs4331759	0.87[EUR][1000 genomes]
rs4362799	0.84[EUR][1000 genomes]
rs4495020	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4524361	0.81[EUR][1000 genomes]
rs4524362	0.87[EUR][1000 genomes]
rs4593104	0.83[EUR][1000 genomes]
rs6815740	0.83[EUR][1000 genomes]
rs7664899	0.83[EUR][1000 genomes]
rs7674474	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830154	chr4:174781983-174940640	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174914800-174922400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:174918200-174920000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search: