Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	EP300	chr4:174914344-174914711	SK-N-SH_RA	brain:	n/a	n/a
2	EP300	chr4:174909779-174914969	SK-N-SH	brain:	n/a	chr4:174913392-174913401 chr4:174910470-174910479 chr4:174913391-174913405

Variant related genes	Relation type
ENSG00000251216	TF binding region

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10002337	0.83[EUR][1000 genomes]
rs10004896	0.83[EUR][1000 genomes]
rs10007379	0.83[EUR][1000 genomes]
rs10028766	0.87[EUR][1000 genomes]
rs10520266	0.81[EUR][1000 genomes]
rs11724216	0.90[ASN][1000 genomes]
rs11735098	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12651065	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13110635	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13110863	0.81[EUR][1000 genomes]
rs13113162	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13119610	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2332799	0.82[EUR][1000 genomes]
rs4235203	0.83[EUR][1000 genomes]
rs4331759	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4362799	0.82[EUR][1000 genomes]
rs4495020	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4524361	0.82[EUR][1000 genomes]
rs4524362	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4593104	0.83[EUR][1000 genomes]
rs6815740	0.83[EUR][1000 genomes]
rs7664899	0.83[EUR][1000 genomes]
rs7674474	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830154	chr4:174781983-174940640	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174910400-174914800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:174914000-174918200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:174914600-174914800	Enhancers	Ovary	ovary
4	chr4:174914600-174914800	Enhancers	Rectal Smooth Muscle	rectum

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