Variant report

Variant	rs11757695
Chromosome Location	chr6:37836673-37836674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37835497..37837699-chr6:37850167..37852091,2	MCF-7	breast:
2	chr6:37835143..37837500-chr6:37850696..37852776,2	MCF-7	breast:
3	chr6:37834905..37837847-chr6:37840827..37844123,3	MCF-7	breast:
4	chr6:37831139..37833570-chr6:37835178..37837982,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs11544071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11753390	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11753809	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11755262	0.85[ASN][1000 genomes]
rs11755592	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11757086	1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11759754	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16890175	0.82[CEU][hapmap];0.94[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17512095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17641690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17648097	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17648426	0.88[EUR][1000 genomes]
rs17648634	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17648699	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2036124	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs2842505	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55753048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56093219	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56100831	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56136126	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57416513	1.00[ASN][1000 genomes]
rs59810748	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60672298	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60943435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60977329	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61125348	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61521259	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61705055	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67979687	0.93[ASN][1000 genomes]
rs68148876	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6909008	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6910601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6925259	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs6930340	0.85[ASN][1000 genomes]
rs72849339	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72849341	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72849350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849354	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72849369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850806	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850831	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850855	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850856	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850871	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850884	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72850893	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs72852516	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72852536	0.85[ASN][1000 genomes]
rs7739801	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7747199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756261	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7767466	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994530	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37808000-37839000	Weak transcription	Fetal Stomach	stomach
2	chr6:37813600-37845200	Weak transcription	K562	blood
3	chr6:37820000-37850200	Weak transcription	Fetal Kidney	kidney
4	chr6:37824000-37842000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:37829000-37837800	Weak transcription	Dnd41	blood
6	chr6:37831000-37846000	Weak transcription	Esophagus	oesophagus
7	chr6:37831200-37837000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:37831200-37839600	Weak transcription	Fetal Lung	lung
9	chr6:37833000-37837000	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:37833000-37837600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr6:37833200-37836800	Enhancers	HSMM	muscle
12	chr6:37833800-37837000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:37834000-37837800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:37834000-37838000	Weak transcription	Fetal Muscle Leg	muscle
15	chr6:37834000-37845800	Weak transcription	Spleen	Spleen
16	chr6:37834000-37846000	Weak transcription	Lung	lung
17	chr6:37834000-37849200	Weak transcription	Fetal Thymus	thymus
18	chr6:37834200-37837000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr6:37834200-37837200	Enhancers	NHEK	skin
20	chr6:37834400-37836800	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr6:37834400-37836800	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr6:37834400-37836800	Enhancers	NHDF-Ad	bronchial
23	chr6:37834400-37837000	Enhancers	HMEC	breast
24	chr6:37834400-37837000	Enhancers	HSMMtube	muscle
25	chr6:37834400-37837600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:37834400-37838000	Enhancers	iPS-18 Cell Line	embryonic stem cell
27	chr6:37834800-37845600	Weak transcription	Pancreas	Pancrea
28	chr6:37834800-37849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:37835000-37838000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:37835200-37836800	Enhancers	Placenta Amnion	Placenta Amnion
31	chr6:37835200-37837400	Weak transcription	Left Ventricle	heart
32	chr6:37835200-37841400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr6:37835200-37843400	Weak transcription	Small Intestine	intestine
34	chr6:37835200-37845000	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:37835200-37845200	Weak transcription	Right Atrium	heart
36	chr6:37835200-37845600	Weak transcription	Thymus	Thymus
37	chr6:37835400-37841200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:37835400-37842400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr6:37835800-37836800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr6:37836000-37836800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr6:37836000-37836800	Enhancers	Hela-S3	cervix
42	chr6:37836000-37836800	Flanking Active TSS	Osteobl	bone
43	chr6:37836000-37842400	Weak transcription	Liver	Liver
44	chr6:37836000-37844000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr6:37836200-37837600	Enhancers	Primary T cells fromperipheralblood	blood
46	chr6:37836200-37839000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr6:37836200-37842600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr6:37836200-37843800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr6:37836400-37836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:37836400-37836800	Enhancers	HUES48 Cell Line	embryonic stem cell

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