Variant report

Variant	rs72849339
Chromosome Location	chr6:37770744-37770745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11544071	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755592	0.80[EUR][1000 genomes]
rs11757086	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11757695	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16890175	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17512095	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17641690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036124	0.80[EUR][1000 genomes]
rs55753048	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56093219	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56136126	0.90[AMR][1000 genomes]
rs60672298	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60943435	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60977329	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61125348	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6910601	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72849341	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849350	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72849354	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72849359	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72849369	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72850806	0.90[AMR][1000 genomes]
rs7747199	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7756261	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7767466	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37766400-37775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37767400-37775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:37767400-37777000	Weak transcription	Right Atrium	heart
4	chr6:37769000-37770800	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr6:37769000-37775400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:37769400-37771400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:37769600-37772000	Weak transcription	HepG2	liver
8	chr6:37769600-37776800	Weak transcription	Liver	Liver
9	chr6:37770200-37771400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr6:37770600-37772600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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