Variant report

Variant	rs72849359
Chromosome Location	chr6:37801734-37801735
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11544071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11753390	0.80[EUR][1000 genomes]
rs11753809	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11755592	0.83[EUR][1000 genomes]
rs11757086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11757622	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11757695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11759754	0.82[EUR][1000 genomes]
rs16890175	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17512095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17641690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17648097	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17648426	0.82[EUR][1000 genomes]
rs17648634	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs17648699	1.00[AFR][1000 genomes]
rs2036124	0.83[EUR][1000 genomes]
rs55753048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56093219	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56100831	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs56136126	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs57416513	0.93[ASN][1000 genomes]
rs59810748	0.80[EUR][1000 genomes]
rs60672298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60943435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60977329	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61125348	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61521259	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs61705055	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs67979687	0.86[ASN][1000 genomes]
rs68148876	0.80[EUR][1000 genomes]
rs6909008	0.86[ASN][1000 genomes]
rs6910601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72849339	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72849341	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72849350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72849354	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72849369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72850806	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72850831	0.82[EUR][1000 genomes]
rs72850855	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72850856	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72850871	0.82[EUR][1000 genomes]
rs72850884	1.00[AFR][1000 genomes]
rs72850893	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs72852516	0.80[EUR][1000 genomes]
rs7739801	0.80[EUR][1000 genomes]
rs7747199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7756261	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7767466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs994530	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:37791400-37801800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:37791400-37801800	Weak transcription	Fetal Brain Female	brain
4	chr6:37791400-37801800	Weak transcription	A549	lung
5	chr6:37791400-37810200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr6:37791400-37813400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr6:37791400-37816000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr6:37792400-37801800	Weak transcription	Fetal Brain Male	brain
9	chr6:37793800-37813600	Weak transcription	NH-A	brain
10	chr6:37794000-37819800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:37794400-37805200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr6:37795000-37813800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:37795000-37825600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr6:37795800-37802200	Weak transcription	NHLF	lung
15	chr6:37795800-37813400	Weak transcription	HSMMtube	muscle
16	chr6:37796000-37812800	Weak transcription	Colonic Mucosa	Colon
17	chr6:37796000-37813200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr6:37796000-37813800	Weak transcription	NHDF-Ad	bronchial
19	chr6:37796000-37815600	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:37796000-37828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr6:37796000-37830600	Weak transcription	Hela-S3	cervix
22	chr6:37796200-37801800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr6:37796200-37801800	Weak transcription	Fetal Kidney	kidney
24	chr6:37796200-37802400	Weak transcription	Fetal Intestine Large	intestine
25	chr6:37796200-37811400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr6:37796200-37813200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:37796400-37803400	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr6:37797800-37808200	Weak transcription	Brain Anterior Caudate	brain
29	chr6:37798000-37801800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr6:37798200-37801800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr6:37798400-37803400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:37798400-37805600	Weak transcription	Osteobl	bone
33	chr6:37798400-37812800	Weak transcription	HSMM	muscle
34	chr6:37798400-37815200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr6:37798400-37815800	Weak transcription	Fetal Heart	heart
36	chr6:37798800-37801800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:37799000-37808400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:37799200-37801800	Weak transcription	Dnd41	blood
39	chr6:37799400-37817400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr6:37799600-37801800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:37799600-37801800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr6:37799600-37806600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr6:37799600-37808000	Weak transcription	K562	blood
44	chr6:37799600-37809400	Weak transcription	Lung	lung
45	chr6:37799600-37811200	Weak transcription	Brain Substantia Nigra	brain
46	chr6:37799600-37811800	Weak transcription	Placenta	Placenta
47	chr6:37799600-37812800	Weak transcription	NHEK	skin
48	chr6:37799600-37813400	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:37799600-37825800	Weak transcription	Esophagus	oesophagus
50	chr6:37799800-37805800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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