Variant report

Variant	rs56093219
Chromosome Location	chr6:37772928-37772929
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37756505..37762867-chr6:37772774..37778127,6	MCF-7	breast:
2	chr6:37762868..37765760-chr6:37771569..37774274,2	MCF-7	breast:
3	chr6:37770736..37773178-chr6:37775480..37777289,2	K562	blood:
4	chr6:37765846..37768187-chr6:37771368..37772947,2	K562	blood:
5	chr6:37771553..37779758-chr6:37784024..37789413,23	MCF-7	breast:
6	chr6:37770736..37773178-chr6:37775480..37777364,3	K562	blood:
7	chr6:37772786..37776209-chr6:37782926..37786197,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZFAND3-3	chr6:37772701-37772967	predAs_ge08_MDGA1_1

No data

Variant related genes	Relation type
ENSG00000156639	Chromatin interaction
ENSG00000225945	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11544071	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11755592	0.80[EUR][1000 genomes]
rs11757086	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11757695	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs16890175	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16890177	0.83[ASN][1000 genomes]
rs16890181	0.83[ASN][1000 genomes]
rs17512095	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17641690	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2036124	0.80[EUR][1000 genomes]
rs2064795	0.83[ASN][1000 genomes]
rs2274090	0.83[ASN][1000 genomes]
rs55753048	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56136126	0.85[AMR][1000 genomes]
rs57198506	0.83[ASN][1000 genomes]
rs58692659	0.87[ASN][1000 genomes]
rs59649654	0.82[ASN][1000 genomes]
rs60141491	0.83[ASN][1000 genomes]
rs60284537	0.83[ASN][1000 genomes]
rs60672298	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs60943435	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60977329	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61125348	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61332486	0.87[ASN][1000 genomes]
rs61466900	0.83[ASN][1000 genomes]
rs6910601	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72849339	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72849341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849350	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72849354	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72849359	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72849369	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72850806	0.85[AMR][1000 genomes]
rs7747199	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7756261	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7767466	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37766400-37775400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:37767400-37775400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:37767400-37777000	Weak transcription	Right Atrium	heart
4	chr6:37769000-37775400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:37769600-37776800	Weak transcription	Liver	Liver
6	chr6:37772000-37773000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:37772000-37773000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:37772400-37773000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr6:37772400-37773000	Enhancers	HMEC	breast
10	chr6:37772400-37773000	Enhancers	NHEK	skin
11	chr6:37772600-37773600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:37772600-37775200	Weak transcription	HSMMtube	muscle
13	chr6:37772600-37776800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:37772800-37774600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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