Variant report

Variant	rs6910601
Chromosome Location	chr6:37817781-37817782
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:37786481..37788955-chr6:37817601..37820838,4	MCF-7	breast:
2	chr6:37811967..37814483-chr6:37816541..37818397,2	MCF-7	breast:
3	chr6:37814297..37817190-chr6:37817323..37820786,4	K562	blood:
4	chr6:37785801..37789989-chr6:37816126..37822901,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11544071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11753390	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11753809	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11755262	0.85[ASN][1000 genomes]
rs11755592	0.85[EUR][1000 genomes]
rs11757086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11757622	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11757695	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11759754	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16890175	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17512095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17641690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17648097	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17648426	0.83[EUR][1000 genomes]
rs17648634	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17648699	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs2036124	0.85[EUR][1000 genomes]
rs55753048	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56093219	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56100831	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56136126	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57416513	1.00[ASN][1000 genomes]
rs59810748	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60672298	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60943435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60977329	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61125348	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61521259	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61705055	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs67979687	0.93[ASN][1000 genomes]
rs68148876	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6909008	0.93[ASN][1000 genomes]
rs6925259	0.85[ASN][1000 genomes]
rs6930340	0.85[ASN][1000 genomes]
rs72849339	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72849341	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72849350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849354	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72849359	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72849369	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72850806	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850831	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850855	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850856	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850871	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72850884	1.00[AFR][1000 genomes]
rs72850893	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs72852516	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs72852536	0.85[ASN][1000 genomes]
rs7739801	0.82[EUR][1000 genomes]
rs7747199	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7756261	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7767466	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs994530	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1017051	chr6:37789341-38084719	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538203	chr6:37789341-38084719	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1018711	chr6:37813397-37981590	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1016375	chr6:37816863-37865655	Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
7	nsv538204	chr6:37816863-37865655	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37791200-37820000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:37794000-37819800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr6:37795000-37825600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr6:37796000-37828800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:37796000-37830600	Weak transcription	Hela-S3	cervix
6	chr6:37799600-37825800	Weak transcription	Esophagus	oesophagus
7	chr6:37799800-37825400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:37800200-37830200	Weak transcription	Ovary	ovary
9	chr6:37800200-37836200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:37801000-37818600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr6:37801200-37833400	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:37802400-37818400	Weak transcription	Primary B cells from cord blood	blood
13	chr6:37802600-37818400	Weak transcription	Fetal Lung	lung
14	chr6:37802600-37834400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr6:37803000-37823800	Weak transcription	Fetal Intestine Large	intestine
16	chr6:37806800-37830800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:37808000-37839000	Weak transcription	Fetal Stomach	stomach
18	chr6:37808400-37818000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:37808600-37817800	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:37808600-37818200	Weak transcription	Brain Anterior Caudate	brain
21	chr6:37808600-37832600	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr6:37809400-37823400	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr6:37809600-37825400	Weak transcription	Aorta	Aorta
24	chr6:37811000-37823600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:37812000-37831400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr6:37812000-37832600	Weak transcription	Primary hematopoietic stem cells	blood
27	chr6:37812200-37830200	Weak transcription	Thymus	Thymus
28	chr6:37812400-37830800	Weak transcription	Fetal Thymus	thymus
29	chr6:37812600-37836000	Weak transcription	Fetal Intestine Small	intestine
30	chr6:37813000-37818600	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr6:37813600-37819800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:37813600-37845200	Weak transcription	K562	blood
33	chr6:37814000-37818000	Weak transcription	GM12878-XiMat	blood
34	chr6:37814000-37818200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr6:37814000-37818200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:37814000-37826600	Weak transcription	Stomach Smooth Muscle	stomach
37	chr6:37814000-37828600	Weak transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:37814000-37830800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr6:37814000-37835400	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr6:37814200-37817800	Weak transcription	NHDF-Ad	bronchial
41	chr6:37814200-37818600	Weak transcription	Small Intestine	intestine
42	chr6:37814200-37819200	Weak transcription	Fetal Kidney	kidney
43	chr6:37814200-37820600	Enhancers	Liver	Liver
44	chr6:37814200-37824000	Weak transcription	HSMM	muscle
45	chr6:37814200-37824000	Weak transcription	Osteobl	bone
46	chr6:37814200-37824800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:37814200-37833400	Weak transcription	HSMMtube	muscle
48	chr6:37814400-37819800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr6:37814400-37819800	Weak transcription	HepG2	liver
50	chr6:37814400-37819800	Weak transcription	HMEC	breast

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