Variant report

Variant	rs11764640
Chromosome Location	chr7:21899332-21899333
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10268224	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10274154	0.85[CHB][hapmap]
rs10275701	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs11971295	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs11979038	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs11980938	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs11982264	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs17145649	0.85[CHB][hapmap]
rs17145665	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2074327	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs2106914	0.92[CHB][hapmap]
rs2106915	0.92[CHB][hapmap];0.88[JPT][hapmap]
rs2106916	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs9969212	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs9969213	0.85[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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