Variant report

Variant	rs2074327
Chromosome Location	chr7:21892495-21892496
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10225595	0.87[ASN][1000 genomes]
rs10268224	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10271915	0.93[ASN][1000 genomes]
rs10274154	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10275701	0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs11764640	0.85[CHB][hapmap];0.90[JPT][hapmap]
rs11971295	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap];0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11979038	0.93[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs11980938	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs11982264	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16873036	0.82[YRI][hapmap]
rs17145649	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17145665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2106914	0.93[CHB][hapmap];0.90[JPT][hapmap];0.90[YRI][hapmap]
rs2106915	0.92[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap]
rs2106916	0.92[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap]
rs28866954	0.87[ASN][1000 genomes]
rs60740148	0.87[ASN][1000 genomes]
rs61635114	0.87[ASN][1000 genomes]
rs73277801	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73279811	0.87[ASN][1000 genomes]
rs73279813	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73279826	0.89[ASN][1000 genomes]
rs73279830	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9969212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9969213	1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21890200-21893000	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr7:21890200-21893000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr7:21890400-21892600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:21890400-21892600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr7:21891000-21892600	Enhancers	Primary T killer memory cells from peripheral blood	blood
6	chr7:21891000-21893000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr7:21891600-21892800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr7:21891600-21893000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr7:21891800-21893000	Enhancers	Primary T cells from cord blood	blood
10	chr7:21892400-21893600	Enhancers	HUVEC	blood vessel

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