Variant report

Variant	rs11980938
Chromosome Location	chr7:21897871-21897872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10225595	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10255090	0.87[EUR][1000 genomes]
rs10268224	0.92[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10271915	0.81[ASN][1000 genomes]
rs10274154	0.92[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs10275701	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11764640	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs11971295	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11979038	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11982264	1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs17145649	0.92[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs17145665	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs2074327	0.92[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs2106914	1.00[CHB][hapmap];0.95[JPT][hapmap]
rs2106915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2106916	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs28866954	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60740148	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60851464	1.00[EUR][1000 genomes]
rs61635114	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73277801	0.81[ASN][1000 genomes]
rs73279811	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73279813	0.81[ASN][1000 genomes]
rs73279826	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73279830	0.87[ASN][1000 genomes]
rs9969170	0.92[LWK][hapmap]
rs9969212	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs9969213	0.92[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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