Variant report
| Variant | rs73279830 |
|---|---|
| Chromosome Location | chr7:21894086-21894087 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:21890125..21891928-chr7:21893503..21895812,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000105877 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10225595 | 0.86[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10255090 | 0.84[AFR][1000 genomes] |
| rs10268224 | 0.81[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10271915 | 0.91[ASN][1000 genomes] |
| rs10274154 | 0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11971295 | 0.89[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs11979038 | 0.83[AFR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11982264 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs17145649 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs17145665 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2074327 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs28866954 | 0.86[ASN][1000 genomes] |
| rs60740148 | 0.86[ASN][1000 genomes] |
| rs61635114 | 0.85[ASN][1000 genomes] |
| rs73277801 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73279811 | 0.86[ASN][1000 genomes] |
| rs73279813 | 1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73279826 | 0.86[AFR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1018133 | chr7:21740118-22055283 | Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 22 gene(s) | inside rSNPs | diseases |
| 2 | nsv830922 | chr7:21793386-21964675 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
