Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr7:21890294-21890458	SH-SY5Y	brain:	n/a	n/a
2	FOXA1	chr7:21890245-21890530	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
DNAH11	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10225595	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10255090	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10268224	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10271915	0.91[ASN][1000 genomes]
rs10274154	0.84[ASN][1000 genomes]
rs11971295	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11979038	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11982264	0.86[ASN][1000 genomes]
rs17145649	0.83[ASN][1000 genomes]
rs17145665	0.88[ASN][1000 genomes]
rs2074327	0.87[ASN][1000 genomes]
rs60740148	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60851464	1.00[EUR][1000 genomes]
rs61635114	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73277801	0.90[ASN][1000 genomes]
rs73279811	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73279813	0.90[ASN][1000 genomes]
rs73279826	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73279830	0.86[ASN][1000 genomes]
rs9969170	0.85[AFR][1000 genomes]
rs9969255	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21889200-21891000	Enhancers	Primary T cells from cord blood	blood
2	chr7:21890000-21891400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:21890200-21890800	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr7:21890200-21893000	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr7:21890200-21893000	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr7:21890400-21890800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr7:21890400-21890800	Enhancers	HUVEC	blood vessel
8	chr7:21890400-21891600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:21890400-21892600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:21890400-21892600	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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