Variant report

Variant	rs17145649
Chromosome Location	chr7:21882424-21882425
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10268224	1.00[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs10271915	0.89[ASN][1000 genomes]
rs10274154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10275701	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs11764640	0.85[CHB][hapmap]
rs11971295	1.00[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs11979038	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs11980938	0.92[CHB][hapmap];0.90[CHD][hapmap];0.84[JPT][hapmap]
rs11982264	1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[CHD][hapmap];0.83[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17145665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2106914	0.92[CHB][hapmap]
rs2106915	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs2106916	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs28866954	0.83[ASN][1000 genomes]
rs60740148	0.83[ASN][1000 genomes]
rs61635114	0.84[ASN][1000 genomes]
rs73277801	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73279811	0.83[ASN][1000 genomes]
rs73279813	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73279826	0.80[ASN][1000 genomes]
rs73279830	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7808371	1.00[MEX][hapmap]
rs9638793	1.00[MEX][hapmap]
rs9969212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs9969213	1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv933320	chr7:21840543-21882825	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21869800-21884400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr7:21881200-21884400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:21882200-21882800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:21882400-21882600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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