Variant report

Variant	rs11979038
Chromosome Location	chr7:21895722-21895723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:21890125..21891928-chr7:21893503..21895812,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105877	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10225595	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10255090	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10268224	0.93[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10271915	0.83[ASN][1000 genomes]
rs10274154	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs10275701	1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[YRI][hapmap]
rs11764640	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs11971295	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11980938	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs11982264	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17145649	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs17145665	0.93[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2074327	0.93[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs2106914	1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[YRI][hapmap]
rs2106915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2106916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs28866954	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60740148	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60851464	1.00[EUR][1000 genomes]
rs61635114	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73277801	0.82[ASN][1000 genomes]
rs73279811	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73279813	0.82[ASN][1000 genomes]
rs73279826	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73279830	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs9969212	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs9969213	0.93[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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