Variant report

Variant	rs11774021
Chromosome Location	chr8:59612992-59612993
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59471998..59473866-chr8:59612178..59614856,2	K562	blood:
2	chr8:59570231..59572526-chr8:59612952..59614876,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000035681	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11778584	0.90[EUR][1000 genomes]
rs11781783	0.83[EUR][1000 genomes]
rs11785361	0.83[EUR][1000 genomes]
rs2634490	0.86[EUR][1000 genomes]
rs2634491	0.86[EUR][1000 genomes]
rs2634492	0.86[EUR][1000 genomes]
rs2634493	0.86[EUR][1000 genomes]
rs2634494	0.86[EUR][1000 genomes]
rs2634497	0.81[EUR][1000 genomes]
rs2634498	0.81[EUR][1000 genomes]
rs2634499	0.81[EUR][1000 genomes]
rs2634501	0.81[EUR][1000 genomes]
rs2634502	0.81[EUR][1000 genomes]
rs2634503	0.81[EUR][1000 genomes]
rs2693439	0.81[EUR][1000 genomes]
rs2693441	0.81[EUR][1000 genomes]
rs2693442	0.81[EUR][1000 genomes]
rs2693443	0.81[EUR][1000 genomes]
rs2693444	0.86[EUR][1000 genomes]
rs2693445	0.86[EUR][1000 genomes]
rs2693446	0.86[EUR][1000 genomes]
rs2693447	0.86[EUR][1000 genomes]
rs2726559	0.86[EUR][1000 genomes]
rs2726560	0.86[EUR][1000 genomes]
rs2726562	0.86[EUR][1000 genomes]
rs2726563	0.86[EUR][1000 genomes]
rs2726564	0.86[EUR][1000 genomes]
rs2726565	0.86[EUR][1000 genomes]
rs2726566	0.86[EUR][1000 genomes]
rs2726567	0.86[EUR][1000 genomes]
rs2726568	0.86[EUR][1000 genomes]
rs2726569	0.86[EUR][1000 genomes]
rs2726570	0.86[EUR][1000 genomes]
rs2726572	0.86[EUR][1000 genomes]
rs2726573	0.86[EUR][1000 genomes]
rs2726574	0.81[EUR][1000 genomes]
rs2726575	0.81[EUR][1000 genomes]
rs2726577	0.81[EUR][1000 genomes]
rs2726578	0.81[EUR][1000 genomes]
rs2726579	0.81[EUR][1000 genomes]
rs2726580	0.81[EUR][1000 genomes]
rs28800927	0.82[EUR][1000 genomes]
rs62505073	0.81[EUR][1000 genomes]
rs62507503	0.86[EUR][1000 genomes]
rs62507504	0.86[EUR][1000 genomes]
rs62507505	0.86[EUR][1000 genomes]
rs62507506	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv3436252	chr8:59581925-59615994	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1025575	chr8:59609825-59632135	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59612800-59613400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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