Variant report

Variant	rs28800927
Chromosome Location	chr8:59623642-59623643
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59623611..59626504-chr8:59628202..59631165,3	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11774021	0.82[EUR][1000 genomes]
rs11778584	0.91[EUR][1000 genomes]
rs11781783	0.84[EUR][1000 genomes]
rs11785361	0.84[EUR][1000 genomes]
rs2634490	0.86[EUR][1000 genomes]
rs2634491	0.86[EUR][1000 genomes]
rs2634492	0.86[EUR][1000 genomes]
rs2634493	0.86[EUR][1000 genomes]
rs2634494	0.86[EUR][1000 genomes]
rs2634497	0.82[EUR][1000 genomes]
rs2634498	0.82[EUR][1000 genomes]
rs2634499	0.82[EUR][1000 genomes]
rs2634501	0.82[EUR][1000 genomes]
rs2634502	0.82[EUR][1000 genomes]
rs2634503	0.82[EUR][1000 genomes]
rs2693439	0.82[EUR][1000 genomes]
rs2693441	0.82[EUR][1000 genomes]
rs2693442	0.82[EUR][1000 genomes]
rs2693443	0.82[EUR][1000 genomes]
rs2693444	0.86[EUR][1000 genomes]
rs2693445	0.86[EUR][1000 genomes]
rs2693446	0.86[EUR][1000 genomes]
rs2693447	0.86[EUR][1000 genomes]
rs2726559	0.86[EUR][1000 genomes]
rs2726560	0.86[EUR][1000 genomes]
rs2726562	0.86[EUR][1000 genomes]
rs2726563	0.86[EUR][1000 genomes]
rs2726564	0.86[EUR][1000 genomes]
rs2726565	0.86[EUR][1000 genomes]
rs2726566	0.86[EUR][1000 genomes]
rs2726567	0.86[EUR][1000 genomes]
rs2726568	0.86[EUR][1000 genomes]
rs2726569	0.86[EUR][1000 genomes]
rs2726570	0.86[EUR][1000 genomes]
rs2726572	0.86[EUR][1000 genomes]
rs2726573	0.86[EUR][1000 genomes]
rs2726574	0.82[EUR][1000 genomes]
rs2726575	0.82[EUR][1000 genomes]
rs2726577	0.82[EUR][1000 genomes]
rs2726578	0.82[EUR][1000 genomes]
rs2726579	0.82[EUR][1000 genomes]
rs2726580	0.82[EUR][1000 genomes]
rs62505073	0.81[EUR][1000 genomes]
rs62507503	0.86[EUR][1000 genomes]
rs62507504	0.86[EUR][1000 genomes]
rs62507505	0.86[EUR][1000 genomes]
rs62507506	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025575	chr8:59609825-59632135	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59623600-59627800	Weak transcription	Small Intestine	intestine

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