Variant report

Variant	rs11778584
Chromosome Location	chr8:59653308-59653309
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59652398..59654780-chr8:59659355..59662086,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TOX-2	chr8:59653264-59653383	NONHSAT126796

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11774021	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs11781783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11785361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2634490	0.95[EUR][1000 genomes]
rs2634491	0.95[EUR][1000 genomes]
rs2634492	0.95[EUR][1000 genomes]
rs2634493	0.95[EUR][1000 genomes]
rs2634494	0.95[EUR][1000 genomes]
rs2634497	0.90[EUR][1000 genomes]
rs2634498	0.90[EUR][1000 genomes]
rs2634499	0.90[EUR][1000 genomes]
rs2634500	0.85[EUR][1000 genomes]
rs2634501	0.90[EUR][1000 genomes]
rs2634502	0.90[EUR][1000 genomes]
rs2634503	0.90[EUR][1000 genomes]
rs2634505	0.85[EUR][1000 genomes]
rs2634506	0.88[EUR][1000 genomes]
rs2634507	0.88[EUR][1000 genomes]
rs2634508	0.88[EUR][1000 genomes]
rs2634509	0.88[EUR][1000 genomes]
rs2634510	0.81[EUR][1000 genomes]
rs2634511	0.85[EUR][1000 genomes]
rs2634512	0.85[EUR][1000 genomes]
rs2693436	0.85[EUR][1000 genomes]
rs2693437	0.80[EUR][1000 genomes]
rs2693439	0.90[EUR][1000 genomes]
rs2693441	0.90[EUR][1000 genomes]
rs2693442	0.90[EUR][1000 genomes]
rs2693443	0.90[EUR][1000 genomes]
rs2693444	0.95[EUR][1000 genomes]
rs2693445	0.95[EUR][1000 genomes]
rs2693446	0.95[EUR][1000 genomes]
rs2693447	0.95[EUR][1000 genomes]
rs2726559	0.95[EUR][1000 genomes]
rs2726560	0.95[EUR][1000 genomes]
rs2726562	0.95[EUR][1000 genomes]
rs2726563	0.95[EUR][1000 genomes]
rs2726564	0.95[EUR][1000 genomes]
rs2726565	0.95[EUR][1000 genomes]
rs2726566	0.95[EUR][1000 genomes]
rs2726567	0.95[EUR][1000 genomes]
rs2726568	0.95[EUR][1000 genomes]
rs2726569	0.95[EUR][1000 genomes]
rs2726570	0.95[EUR][1000 genomes]
rs2726572	0.95[EUR][1000 genomes]
rs2726573	0.95[EUR][1000 genomes]
rs2726574	0.90[EUR][1000 genomes]
rs2726575	0.90[EUR][1000 genomes]
rs2726577	0.90[EUR][1000 genomes]
rs2726578	0.90[EUR][1000 genomes]
rs2726579	0.90[EUR][1000 genomes]
rs2726580	0.90[EUR][1000 genomes]
rs2726581	0.88[EUR][1000 genomes]
rs2726582	0.88[EUR][1000 genomes]
rs2726583	0.88[EUR][1000 genomes]
rs28800927	0.91[EUR][1000 genomes]
rs62505073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62507503	0.95[EUR][1000 genomes]
rs62507504	0.95[EUR][1000 genomes]
rs62507505	0.95[EUR][1000 genomes]
rs62507506	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59651400-59661000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:59651600-59655000	Weak transcription	Fetal Intestine Large	intestine
3	chr8:59652800-59653400	Enhancers	Fetal Muscle Leg	muscle
4	chr8:59652800-59653600	Enhancers	Thymus	Thymus
5	chr8:59652800-59654000	Enhancers	Fetal Thymus	thymus
6	chr8:59653000-59653400	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr8:59653000-59654000	Enhancers	Dnd41	blood
8	chr8:59653200-59657000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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