Variant report

Variant	rs62505073
Chromosome Location	chr8:59673443-59673444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11774021	0.81[EUR][1000 genomes]
rs11778584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11781783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11785361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2634490	0.85[EUR][1000 genomes]
rs2634491	0.85[EUR][1000 genomes]
rs2634492	0.85[EUR][1000 genomes]
rs2634493	0.85[EUR][1000 genomes]
rs2634494	0.85[EUR][1000 genomes]
rs2634497	0.90[EUR][1000 genomes]
rs2634498	0.90[EUR][1000 genomes]
rs2634499	0.90[EUR][1000 genomes]
rs2634500	0.85[EUR][1000 genomes]
rs2634501	0.90[EUR][1000 genomes]
rs2634502	0.90[EUR][1000 genomes]
rs2634503	0.90[EUR][1000 genomes]
rs2634505	0.85[EUR][1000 genomes]
rs2634506	0.92[EUR][1000 genomes]
rs2634507	0.92[EUR][1000 genomes]
rs2634508	0.92[EUR][1000 genomes]
rs2634509	0.92[EUR][1000 genomes]
rs2634510	0.90[EUR][1000 genomes]
rs2634511	0.95[EUR][1000 genomes]
rs2634512	0.95[EUR][1000 genomes]
rs2693436	0.95[EUR][1000 genomes]
rs2693437	0.89[EUR][1000 genomes]
rs2693439	0.90[EUR][1000 genomes]
rs2693441	0.90[EUR][1000 genomes]
rs2693442	0.90[EUR][1000 genomes]
rs2693443	0.90[EUR][1000 genomes]
rs2693444	0.85[EUR][1000 genomes]
rs2693445	0.85[EUR][1000 genomes]
rs2693446	0.85[EUR][1000 genomes]
rs2693447	0.85[EUR][1000 genomes]
rs2726559	0.85[EUR][1000 genomes]
rs2726560	0.85[EUR][1000 genomes]
rs2726562	0.85[EUR][1000 genomes]
rs2726563	0.85[EUR][1000 genomes]
rs2726564	0.85[EUR][1000 genomes]
rs2726565	0.85[EUR][1000 genomes]
rs2726566	0.85[EUR][1000 genomes]
rs2726567	0.85[EUR][1000 genomes]
rs2726568	0.85[EUR][1000 genomes]
rs2726569	0.85[EUR][1000 genomes]
rs2726570	0.85[EUR][1000 genomes]
rs2726572	0.85[EUR][1000 genomes]
rs2726573	0.85[EUR][1000 genomes]
rs2726574	0.90[EUR][1000 genomes]
rs2726575	0.90[EUR][1000 genomes]
rs2726577	0.90[EUR][1000 genomes]
rs2726578	0.90[EUR][1000 genomes]
rs2726579	0.90[EUR][1000 genomes]
rs2726580	0.90[EUR][1000 genomes]
rs2726581	0.92[EUR][1000 genomes]
rs2726582	0.92[EUR][1000 genomes]
rs2726583	0.92[EUR][1000 genomes]
rs28800927	0.81[EUR][1000 genomes]
rs62507503	0.85[EUR][1000 genomes]
rs62507504	0.85[EUR][1000 genomes]
rs62507505	0.85[EUR][1000 genomes]
rs62507506	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59661400-59674600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:59672400-59675200	Weak transcription	Fetal Thymus	thymus
3	chr8:59672400-59675400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59672600-59679400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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