Variant report

Variant	rs11781783
Chromosome Location	chr8:59671747-59671748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:59665733..59668294-chr8:59669287..59672365,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs11774021	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs11778584	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11785361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2634490	0.88[EUR][1000 genomes]
rs2634491	0.88[EUR][1000 genomes]
rs2634492	0.88[EUR][1000 genomes]
rs2634493	0.88[EUR][1000 genomes]
rs2634494	0.88[EUR][1000 genomes]
rs2634497	0.93[EUR][1000 genomes]
rs2634498	0.93[EUR][1000 genomes]
rs2634499	0.93[EUR][1000 genomes]
rs2634500	0.87[EUR][1000 genomes]
rs2634501	0.93[EUR][1000 genomes]
rs2634502	0.93[EUR][1000 genomes]
rs2634503	0.93[EUR][1000 genomes]
rs2634505	0.87[EUR][1000 genomes]
rs2634506	0.95[EUR][1000 genomes]
rs2634507	0.95[EUR][1000 genomes]
rs2634508	0.95[EUR][1000 genomes]
rs2634509	0.95[EUR][1000 genomes]
rs2634510	0.88[EUR][1000 genomes]
rs2634511	0.92[EUR][1000 genomes]
rs2634512	0.92[EUR][1000 genomes]
rs2693436	0.92[EUR][1000 genomes]
rs2693437	0.87[EUR][1000 genomes]
rs2693439	0.93[EUR][1000 genomes]
rs2693441	0.93[EUR][1000 genomes]
rs2693442	0.93[EUR][1000 genomes]
rs2693443	0.93[EUR][1000 genomes]
rs2693444	0.88[EUR][1000 genomes]
rs2693445	0.88[EUR][1000 genomes]
rs2693446	0.88[EUR][1000 genomes]
rs2693447	0.88[EUR][1000 genomes]
rs2726559	0.88[EUR][1000 genomes]
rs2726560	0.88[EUR][1000 genomes]
rs2726562	0.88[EUR][1000 genomes]
rs2726563	0.88[EUR][1000 genomes]
rs2726564	0.88[EUR][1000 genomes]
rs2726565	0.88[EUR][1000 genomes]
rs2726566	0.88[EUR][1000 genomes]
rs2726567	0.88[EUR][1000 genomes]
rs2726568	0.88[EUR][1000 genomes]
rs2726569	0.88[EUR][1000 genomes]
rs2726570	0.88[EUR][1000 genomes]
rs2726572	0.88[EUR][1000 genomes]
rs2726573	0.88[EUR][1000 genomes]
rs2726574	0.93[EUR][1000 genomes]
rs2726575	0.93[EUR][1000 genomes]
rs2726577	0.93[EUR][1000 genomes]
rs2726578	0.93[EUR][1000 genomes]
rs2726579	0.93[EUR][1000 genomes]
rs2726580	0.93[EUR][1000 genomes]
rs2726581	0.95[EUR][1000 genomes]
rs2726582	0.95[EUR][1000 genomes]
rs2726583	0.95[EUR][1000 genomes]
rs28800927	0.84[EUR][1000 genomes]
rs62505073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62507503	0.88[EUR][1000 genomes]
rs62507504	0.88[EUR][1000 genomes]
rs62507505	0.88[EUR][1000 genomes]
rs62507506	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59661400-59674600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:59666600-59672000	Weak transcription	K562	blood
3	chr8:59670400-59672000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59670800-59672800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:59671000-59672400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr8:59671000-59672800	Enhancers	NHDF-Ad	bronchial
7	chr8:59671400-59672400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:59671400-59672400	Enhancers	HUVEC	blood vessel
9	chr8:59671400-59672600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:59671400-59672600	Enhancers	HSMM	muscle
11	chr8:59671600-59672200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr8:59671600-59672200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:59671600-59672200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr8:59671600-59672200	Enhancers	NHEK	skin
15	chr8:59671600-59672400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:59671600-59672400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:59671600-59672400	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:59671600-59672400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:59671600-59672400	Enhancers	HMEC	breast
20	chr8:59671600-59672400	Enhancers	NH-A	brain
21	chr8:59671600-59672600	Enhancers	A549	lung
22	chr8:59671600-59672600	Enhancers	Dnd41	blood
23	chr8:59671600-59672600	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links