Variant report

Variant	rs11795149
Chromosome Location	chr9:72844914-72844915
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72762270..72763345-chr9:72843683..72845020,7	MCF-7	breast:
2	chr9:72586559..72587592-chr9:72844298..72845151,6	K562	blood:
3	chr9:72735746..72736503-chr9:72844295..72845240,3	MCF-7	breast:
4	chr9:72586588..72587213-chr9:72844309..72845161,2	MCF-7	breast:
5	chr9:72728136..72728905-chr9:72844176..72845074,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204706	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10114223	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10780924	1.00[ASN][1000 genomes]
rs10868800	0.95[EUR][1000 genomes]
rs10868810	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142348	0.95[EUR][1000 genomes]
rs11142364	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142365	1.00[ASN][1000 genomes]
rs11142372	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142375	0.91[EUR][1000 genomes]
rs11142377	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142379	1.00[ASN][1000 genomes]
rs11142380	1.00[ASN][1000 genomes]
rs11142381	1.00[ASN][1000 genomes]
rs11521805	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180080	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180084	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180089	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180100	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180110	1.00[ASN][1000 genomes]
rs1180113	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180119	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1183311	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11999862	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17052678	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1888155	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927094	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927097	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927114	0.86[EUR][1000 genomes]
rs1927123	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927138	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927140	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927141	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927145	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927146	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148854	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148855	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182733	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209781	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225128	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309601	0.86[EUR][1000 genomes]
rs2309637	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309641	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309645	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309646	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871297	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744587	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744985	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66524845	0.91[EUR][1000 genomes]
rs66756859	0.95[EUR][1000 genomes]
rs7020575	0.86[EUR][1000 genomes]
rs7042675	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72712293	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72712300	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341691	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848955	0.86[EUR][1000 genomes]
rs7865289	0.86[EUR][1000 genomes]
rs9410662	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943532	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943533	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943535	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72828000-72858800	Weak transcription	Gastric	stomach
2	chr9:72830800-72845200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr9:72832400-72848800	Weak transcription	Lung	lung
4	chr9:72833600-72856800	Weak transcription	Aorta	Aorta
5	chr9:72837200-72847200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:72843000-72845000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr9:72843000-72846200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:72843200-72845000	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:72843200-72845000	Enhancers	Fetal Lung	lung
10	chr9:72843200-72845000	Enhancers	Ovary	ovary
11	chr9:72843200-72845200	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr9:72843200-72845800	Enhancers	Fetal Muscle Leg	muscle
13	chr9:72843200-72845800	Enhancers	Stomach Smooth Muscle	stomach
14	chr9:72843400-72845000	Enhancers	Colon Smooth Muscle	Colon
15	chr9:72843400-72845000	Enhancers	Fetal Stomach	stomach
16	chr9:72843600-72845000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr9:72843600-72845000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:72844000-72845000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr9:72844000-72845000	Enhancers	NHDF-Ad	bronchial
20	chr9:72844000-72845000	Enhancers	NHLF	lung
21	chr9:72844000-72845800	Enhancers	HSMM	muscle
22	chr9:72844200-72847200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr9:72844200-72849200	Weak transcription	Right Ventricle	heart
24	chr9:72844400-72845000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr9:72844400-72855400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:72844600-72845000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr9:72844800-72845000	Enhancers	HMEC	breast
28	chr9:72844800-72845000	Enhancers	HSMMtube	muscle

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