Variant report

Variant	rs1888155
Chromosome Location	chr9:72942935-72942936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10114223	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10735584	0.81[AMR][1000 genomes]
rs10780924	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10868800	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10868810	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142348	0.91[EUR][1000 genomes]
rs11142364	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142365	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11142372	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142375	0.95[EUR][1000 genomes]
rs11142377	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11142379	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11142380	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11142381	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11521805	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11795149	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180080	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180084	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180089	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180097	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180100	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180110	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1180111	0.84[AFR][1000 genomes]
rs1180113	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180119	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1180134	0.95[EUR][1000 genomes]
rs1183311	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11999862	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17052678	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927108	0.81[AMR][1000 genomes]
rs1927109	0.81[AMR][1000 genomes]
rs1927112	0.87[AMR][1000 genomes]
rs1927114	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1927123	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927138	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927140	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927141	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927145	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1927146	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148854	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2148855	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2182733	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209781	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225128	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309601	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2309637	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309641	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309643	0.81[EUR][1000 genomes]
rs2309645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2871297	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744587	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4744985	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66524845	0.95[EUR][1000 genomes]
rs66756859	0.91[EUR][1000 genomes]
rs7020575	0.81[EUR][1000 genomes]
rs7042675	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72712293	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72712300	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7341691	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7848955	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7865289	0.81[EUR][1000 genomes]
rs9410662	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943532	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943533	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs943535	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047862	chr9:72746875-73138287	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv831615	chr9:72852705-73019692	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1049132	chr9:72895382-73005897	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72875000-72949800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72876400-72955200	Weak transcription	Stomach Mucosa	stomach
3	chr9:72891400-72948200	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr9:72912000-72943000	Strong transcription	HSMM	muscle
5	chr9:72912600-72947800	Strong transcription	Placenta	Placenta
6	chr9:72913800-72957800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:72924000-72944400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr9:72924200-72943200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:72925600-72944000	Strong transcription	Liver	Liver
10	chr9:72926000-72944200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr9:72926200-72945000	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr9:72926400-72965000	Weak transcription	Fetal Brain Male	brain
13	chr9:72926400-72967000	Weak transcription	Fetal Heart	heart
14	chr9:72928200-72948000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr9:72932000-72944400	Strong transcription	Primary T helper cells fromperipheralblood	blood
16	chr9:72932200-72943000	Strong transcription	NH-A	brain
17	chr9:72932200-72944400	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr9:72932800-72943000	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:72932800-72943800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr9:72933000-72943200	Strong transcription	Fetal Thymus	thymus
21	chr9:72935800-72943000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr9:72936000-72970800	Weak transcription	Psoas Muscle	Psoas
23	chr9:72936600-72943400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:72937800-72944400	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr9:72939600-72951200	Weak transcription	K562	blood
26	chr9:72939600-72974000	Weak transcription	Colon Smooth Muscle	Colon
27	chr9:72940000-72948200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:72940200-72943200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr9:72940200-72944800	Weak transcription	NHEK	skin
30	chr9:72940400-72943000	Weak transcription	Small Intestine	intestine
31	chr9:72940400-72943200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr9:72940400-72954400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:72940600-72945400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:72941000-72943200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr9:72941000-72944000	ZNF genes & repeats	Dnd41	blood
36	chr9:72941200-72943600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr9:72941200-72946000	Weak transcription	HMEC	breast
38	chr9:72941200-72965000	Weak transcription	Hela-S3	cervix
39	chr9:72941400-72965200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr9:72941600-72944000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
41	chr9:72941800-72943400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr9:72941800-72944400	Strong transcription	Osteobl	bone
43	chr9:72942000-72943600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr9:72942000-72943800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr9:72942000-72944000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
46	chr9:72942000-72944200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
47	chr9:72942000-72944200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr9:72942000-72944400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr9:72942200-72943000	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr9:72942200-72943200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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