Variant report

Variant	rs11804670
Chromosome Location	chr1:179607591-179607592
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179601476..179603491-chr1:179604853..179608456,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10798697	0.85[EUR][1000 genomes]
rs10798707	1.00[JPT][hapmap]
rs10913830	1.00[JPT][hapmap]
rs10913831	1.00[JPT][hapmap]
rs10913834	1.00[JPT][hapmap]
rs10913835	1.00[JPT][hapmap]
rs10913836	1.00[JPT][hapmap]
rs10913837	1.00[JPT][hapmap]
rs10913838	1.00[JPT][hapmap]
rs10913839	1.00[JPT][hapmap]
rs10913851	1.00[JPT][hapmap]
rs12025031	1.00[JPT][hapmap]
rs12030594	1.00[JPT][hapmap]
rs12038691	1.00[JPT][hapmap]
rs12041396	1.00[JPT][hapmap]
rs12041941	1.00[JPT][hapmap]
rs12042195	1.00[JPT][hapmap]
rs12044010	1.00[JPT][hapmap]
rs12047528	1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12565481	1.00[JPT][hapmap]
rs12566427	1.00[JPT][hapmap]
rs12566750	1.00[JPT][hapmap]
rs4133262	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6704505	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013000	chr1:179589193-179628536	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	esv3394963	chr1:179605329-179609927	Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv511147	chr1:179606157-179608461	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3445853	chr1:179606354-179609202	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3320865	chr1:179606743-179608492	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv511720	chr1:179606860-179608694	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	esv2544242	chr1:179606950-179608405	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv2244958	chr1:179607129-179608229	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	esv3320864	chr1:179607172-179608166	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3526660	chr1:179607198-179608144	Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3526661	chr1:179607201-179608102	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3320867	chr1:179607209-179608128	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3320861	chr1:179607213-179608132	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3320866	chr1:179607227-179608087	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3526662	chr1:179607229-179608102	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3526659	chr1:179607229-179608107	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv5000	chr1:179607245-179608147	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	esv3320868	chr1:179607282-179608060	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	esv997488	chr1:179607357-179608025	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	esv20879	chr1:179607357-179608025	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv821315	chr1:179607357-179608025	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv3426012	chr1:179607372-179608079	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	nsv548335	chr1:179607382-179607884	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	nsv548336	chr1:179607382-179607936	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	esv1819489	chr1:179607382-179608970	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	nsv548337	chr1:179607433-179607936	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
27	nsv548338	chr1:179607433-179608461	Inactive region	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links