Variant report

Variant	rs12566427
Chromosome Location	chr1:179579038-179579039
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179576696..179579139-chr1:179583205..179585737,2	K562	blood:
2	chr1:179576696..179579234-chr1:179580700..179585737,4	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10798697	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798707	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10913824	0.91[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs10913830	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913831	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10913834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913837	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10913838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913839	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap]
rs10913851	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11804670	1.00[JPT][hapmap]
rs11805051	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11811313	1.00[MEX][hapmap]
rs12025031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap]
rs12030594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12032339	0.83[ASN][1000 genomes]
rs12038691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12041396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap];0.81[TSI][hapmap]
rs12041941	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12042195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12044010	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12047528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12070589	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes]
rs12072884	0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs12085410	0.86[AFR][1000 genomes]
rs12086806	0.88[AFR][1000 genomes]
rs12086891	0.88[AFR][1000 genomes]
rs12121642	0.91[ASN][1000 genomes]
rs12128834	1.00[MEX][hapmap]
rs12565481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12565489	1.00[ASN][1000 genomes]
rs12566750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4133262	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4604656	0.90[ASN][1000 genomes]
rs6677468	0.83[ASN][1000 genomes]
rs6677476	0.87[ASN][1000 genomes]
rs6698734	0.88[AFR][1000 genomes]
rs6698746	0.91[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes]
rs6704505	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap]
rs72706714	0.88[AFR][1000 genomes]
rs72706715	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706717	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706762	0.83[ASN][1000 genomes]
rs72706766	0.83[ASN][1000 genomes]
rs72706786	0.83[ASN][1000 genomes]
rs7549026	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs8179491	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12566427	SOAT1	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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