Variant report

Variant	rs12121642
Chromosome Location	chr1:179556174-179556175
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000261060	TF binding region
TDRD5	TF binding region
ENSG00000116218	Chromatin interaction
ENSG00000162782	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10798697	0.91[ASN][1000 genomes]
rs10913830	0.91[ASN][1000 genomes]
rs11805051	0.91[ASN][1000 genomes]
rs12047528	0.87[ASN][1000 genomes]
rs12565489	0.91[ASN][1000 genomes]
rs4133262	0.87[ASN][1000 genomes]
rs4604656	0.82[ASN][1000 genomes]
rs6677468	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6677476	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72706715	0.91[ASN][1000 genomes]
rs72706717	0.91[ASN][1000 genomes]
rs7549026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12121642	TDRD5	cis	Artery Tibial	GTEx

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179555000-179556200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
2	chr1:179555000-179556200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
3	chr1:179555000-179556200	Enhancers	Fetal Brain Male	brain
4	chr1:179555000-179556200	Active TSS	Rectal Smooth Muscle	rectum
5	chr1:179555200-179556200	Active TSS	Brain Anterior Caudate	brain
6	chr1:179555200-179556200	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr1:179555200-179556200	Active TSS	A549	lung
8	chr1:179555600-179556200	Active TSS	Brain Hippocampus Middle	brain
9	chr1:179556000-179556200	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
10	chr1:179556000-179556200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr1:179556000-179556200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:179556000-179556200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr1:179556000-179556200	Flanking Bivalent TSS/Enh	K562	blood
14	chr1:179556000-179556400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
15	chr1:179556000-179560600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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