Variant report

Variant	rs10913830
Chromosome Location	chr1:179574687-179574688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179567719..179570600-chr1:179574245..179576167,2	MCF-7	breast:

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10494519	0.88[CEU][hapmap]
rs10798697	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10798707	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10913824	0.91[ASW][hapmap];0.88[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10913825	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10913831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10913834	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913835	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913836	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913837	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs10913838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913839	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap]
rs10913851	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11799534	0.88[CEU][hapmap]
rs11804670	1.00[JPT][hapmap]
rs11805051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11805875	0.88[CEU][hapmap]
rs11807084	0.89[EUR][1000 genomes]
rs11809475	0.89[EUR][1000 genomes]
rs11811313	0.88[CEU][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes]
rs11811588	0.83[EUR][1000 genomes]
rs12025031	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap]
rs12030594	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12032339	0.83[ASN][1000 genomes]
rs12038691	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12041396	1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[MKK][hapmap]
rs12041941	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12042195	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12044010	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12047528	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12070589	1.00[ASW][hapmap];0.88[CEU][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12072884	0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12085410	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12086806	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12086891	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12121642	0.91[ASN][1000 genomes]
rs12128834	1.00[MEX][hapmap]
rs12565481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12565489	1.00[ASN][1000 genomes]
rs12566427	1.00[ASW][hapmap];0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs12566750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16828724	0.88[CEU][hapmap]
rs17278862	0.83[EUR][1000 genomes]
rs17369441	0.88[CEU][hapmap]
rs2209923	0.88[CEU][hapmap]
rs2209924	0.88[CEU][hapmap]
rs4133262	0.96[ASN][1000 genomes]
rs4604656	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs66623346	0.83[EUR][1000 genomes]
rs6677468	0.83[ASN][1000 genomes]
rs6677476	0.87[ASN][1000 genomes]
rs6689186	0.88[CEU][hapmap]
rs6698734	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6698746	0.91[ASW][hapmap];0.88[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6701343	0.85[EUR][1000 genomes]
rs6704505	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap]
rs72706709	0.85[EUR][1000 genomes]
rs72706712	0.89[EUR][1000 genomes]
rs72706713	0.89[EUR][1000 genomes]
rs72706714	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72706715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706716	0.89[EUR][1000 genomes]
rs72706717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72706730	0.89[EUR][1000 genomes]
rs72706745	0.89[EUR][1000 genomes]
rs72706762	0.83[ASN][1000 genomes]
rs72706766	0.83[ASN][1000 genomes]
rs72706782	0.85[EUR][1000 genomes]
rs72706784	0.85[EUR][1000 genomes]
rs72706786	0.83[ASN][1000 genomes]
rs7520266	0.85[CEU][hapmap]
rs7549026	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs7554967	0.86[CEU][hapmap]
rs8179491	0.83[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179574400-179574800	Active TSS	Sigmoid Colon	Sigmoid Colon

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