Variant report
| Variant | rs12128834 |
|---|---|
| Chromosome Location | chr1:179695998-179695999 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:11)
| rs_ID | r2[population] |
|---|---|
| rs10913824 | 1.00[MEX][hapmap] |
| rs10913830 | 1.00[MEX][hapmap] |
| rs10913839 | 1.00[MEX][hapmap] |
| rs11811313 | 1.00[MEX][hapmap] |
| rs12025031 | 1.00[MEX][hapmap] |
| rs12070589 | 1.00[MEX][hapmap] |
| rs12566427 | 1.00[MEX][hapmap] |
| rs6698746 | 1.00[MEX][hapmap] |
| rs6704505 | 1.00[MEX][hapmap] |
| rs72706792 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs72706797 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv548339 | chr1:179686244-179722827 | Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
