Variant report

Variant	rs11811313
Chromosome Location	chr1:179604199-179604200
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179601826..179604447-chr1:179622966..179625873,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10494519	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs10913824	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10913825	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10913830	0.88[CEU][hapmap];1.00[MEX][hapmap];0.89[EUR][1000 genomes]
rs10913831	0.88[CEU][hapmap]
rs10913839	1.00[MEX][hapmap]
rs11799973	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs11801024	0.86[EUR][1000 genomes]
rs11805051	0.89[EUR][1000 genomes]
rs11805319	0.85[CEU][hapmap]
rs11805875	1.00[CEU][hapmap]
rs11807084	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11808359	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs11809475	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11811588	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12025031	1.00[MEX][hapmap]
rs12070589	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12072884	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12085410	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086806	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12086891	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12128834	1.00[MEX][hapmap]
rs12566427	1.00[MEX][hapmap]
rs16828724	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17278862	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17369441	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MKK][hapmap]
rs1854336	0.84[EUR][1000 genomes]
rs2209923	1.00[CEU][hapmap]
rs2209924	1.00[CEU][hapmap]
rs66623346	0.93[EUR][1000 genomes]
rs6689186	1.00[CEU][hapmap]
rs6698734	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6698746	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6701343	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6704505	1.00[MEX][hapmap]
rs67908894	0.84[EUR][1000 genomes]
rs68054120	0.82[EUR][1000 genomes]
rs72706703	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706705	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706706	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706707	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706708	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706709	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706712	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706713	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706714	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706715	0.89[EUR][1000 genomes]
rs72706716	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706717	0.89[EUR][1000 genomes]
rs72706730	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706782	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706784	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7520266	1.00[CEU][hapmap]
rs7554967	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013000	chr1:179589193-179628536	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179603800-179604400	Enhancers	Brain Germinal Matrix	brain

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