Variant report

Variant	rs11808359
Chromosome Location	chr1:179521684-179521685
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10494519	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10913824	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10913825	0.86[EUR][1000 genomes]
rs11799534	1.00[CEU][hapmap]
rs11799973	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11801024	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11802834	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11803472	1.00[CEU][hapmap]
rs11805319	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11805875	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11806287	0.82[EUR][1000 genomes]
rs11807084	0.86[EUR][1000 genomes]
rs11809095	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11809475	0.86[EUR][1000 genomes]
rs11811313	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12070589	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs12072884	0.86[EUR][1000 genomes]
rs12085410	0.86[EUR][1000 genomes]
rs12086806	0.86[EUR][1000 genomes]
rs12086891	0.86[EUR][1000 genomes]
rs16828724	1.00[CEU][hapmap]
rs16854006	1.00[CEU][hapmap]
rs17369441	1.00[CEU][hapmap]
rs1854336	0.97[EUR][1000 genomes]
rs2209923	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2209924	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6689186	1.00[CEU][hapmap]
rs6698734	0.91[EUR][1000 genomes]
rs6698746	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6701343	0.91[EUR][1000 genomes]
rs67908894	0.97[EUR][1000 genomes]
rs68054120	0.95[EUR][1000 genomes]
rs72704407	0.82[EUR][1000 genomes]
rs72704408	0.82[EUR][1000 genomes]
rs72704416	0.82[EUR][1000 genomes]
rs72704426	0.82[EUR][1000 genomes]
rs72704429	0.82[EUR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704431	0.82[EUR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704468	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706703	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706705	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706706	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706707	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706708	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706709	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72706712	0.86[EUR][1000 genomes]
rs72706713	0.86[EUR][1000 genomes]
rs72706714	0.86[EUR][1000 genomes]
rs72706716	0.86[EUR][1000 genomes]
rs72706730	0.86[EUR][1000 genomes]
rs72706745	0.86[EUR][1000 genomes]
rs72706782	0.81[EUR][1000 genomes]
rs72706784	0.81[EUR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72719259	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72721234	0.82[EUR][1000 genomes]
rs72721237	0.82[EUR][1000 genomes]
rs7520266	1.00[CEU][hapmap]
rs7554967	1.00[CEU][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179515600-179521800	Enhancers	Placenta	Placenta
2	chr1:179520200-179521800	Enhancers	A549	lung
3	chr1:179521400-179521800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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