Variant report

Variant	rs72704431
Chromosome Location	chr1:179462667-179462668
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr1:179462542-179462948	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr1:179462609-179462741	MCF10A-Er-Src	breast:	n/a	n/a
3	FOS	chr1:179462587-179462752	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
ENSG00000269064	TF binding region

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10494519	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11799973	0.82[EUR][1000 genomes]
rs11801024	0.82[EUR][1000 genomes]
rs11802834	0.95[EUR][1000 genomes]
rs11805319	0.92[EUR][1000 genomes]
rs11805875	0.92[EUR][1000 genomes]
rs11806287	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11808359	0.82[EUR][1000 genomes]
rs11809095	1.00[EUR][1000 genomes]
rs1854336	0.80[EUR][1000 genomes]
rs2209923	0.92[EUR][1000 genomes]
rs2209924	0.92[EUR][1000 genomes]
rs6682308	0.92[EUR][1000 genomes]
rs67908894	0.80[EUR][1000 genomes]
rs72704407	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704408	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704416	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704426	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704430	1.00[EUR][1000 genomes]
rs72704457	1.00[EUR][1000 genomes]
rs72704464	0.92[EUR][1000 genomes]
rs72704465	0.92[EUR][1000 genomes]
rs72704468	0.92[EUR][1000 genomes]
rs72706703	0.82[EUR][1000 genomes]
rs72706705	0.82[EUR][1000 genomes]
rs72706706	0.82[EUR][1000 genomes]
rs72706707	0.82[EUR][1000 genomes]
rs72706708	0.82[EUR][1000 genomes]
rs72719210	0.87[EUR][1000 genomes]
rs72719259	0.90[EUR][1000 genomes]
rs72721234	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721237	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv1826150	chr1:179455645-179469253	Inactive region	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
4	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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