Variant report

Variant	rs11809095
Chromosome Location	chr1:179447829-179447830
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10494519	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11799973	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11801024	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11802834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11805319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11805875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11806287	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11808359	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1854336	0.80[EUR][1000 genomes]
rs2209923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2209924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67908894	0.80[EUR][1000 genomes]
rs72704407	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704408	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704416	1.00[EUR][1000 genomes]
rs72704426	1.00[EUR][1000 genomes]
rs72704429	1.00[EUR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704431	1.00[EUR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72706703	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72706705	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72706706	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72706707	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72706708	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72706709	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72715520	1.00[AFR][1000 genomes]
rs72715533	1.00[AFR][1000 genomes]
rs72715595	1.00[AFR][1000 genomes]
rs72715597	1.00[AFR][1000 genomes]
rs72715599	1.00[AFR][1000 genomes]
rs72717527	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72719259	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72721234	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721237	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009624	chr1:179423063-179459676	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv1011557	chr1:179426390-179459460	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179447000-179448000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr1:179447000-179448600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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