Variant report
Variant | rs72719210 |
---|---|
Chromosome Location | chr1:179394325-179394326 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10494519 | 0.87[EUR][1000 genomes] |
rs11799973 | 0.82[AMR][1000 genomes] |
rs11801024 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs11802378 | 1.00[AFR][1000 genomes] |
rs11802834 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes] |
rs11805319 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
rs11805875 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
rs11806287 | 0.87[EUR][1000 genomes] |
rs11807230 | 1.00[AFR][1000 genomes] |
rs11807253 | 1.00[AFR][1000 genomes] |
rs11808359 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs11809032 | 1.00[AFR][1000 genomes] |
rs11809095 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs2209923 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
rs2209924 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
rs6682308 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
rs72704407 | 0.87[EUR][1000 genomes] |
rs72704408 | 0.87[EUR][1000 genomes] |
rs72704416 | 0.87[EUR][1000 genomes] |
rs72704426 | 0.87[EUR][1000 genomes] |
rs72704429 | 0.87[EUR][1000 genomes] |
rs72704430 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72704431 | 0.87[EUR][1000 genomes] |
rs72704457 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs72704464 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
rs72704465 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
rs72704468 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes] |
rs72706703 | 1.00[AFR][1000 genomes] |
rs72706706 | 1.00[AFR][1000 genomes] |
rs72706707 | 1.00[AFR][1000 genomes] |
rs72706708 | 1.00[AFR][1000 genomes] |
rs72706709 | 1.00[AFR][1000 genomes] |
rs72709495 | 1.00[AFR][1000 genomes] |
rs72709497 | 1.00[AFR][1000 genomes] |
rs72711608 | 1.00[AFR][1000 genomes] |
rs72711609 | 1.00[AFR][1000 genomes] |
rs72711612 | 1.00[AFR][1000 genomes] |
rs72711615 | 1.00[AFR][1000 genomes] |
rs72713484 | 1.00[AFR][1000 genomes] |
rs72713485 | 1.00[AFR][1000 genomes] |
rs72713494 | 1.00[AFR][1000 genomes] |
rs72715506 | 1.00[AFR][1000 genomes] |
rs72715515 | 1.00[AFR][1000 genomes] |
rs72715520 | 1.00[AFR][1000 genomes] |
rs72715533 | 1.00[AFR][1000 genomes] |
rs72715595 | 1.00[AFR][1000 genomes] |
rs72715597 | 1.00[AFR][1000 genomes] |
rs72715599 | 1.00[AFR][1000 genomes] |
rs72717523 | 0.82[AMR][1000 genomes] |
rs72717527 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
rs72719259 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs72721234 | 0.87[EUR][1000 genomes] |
rs72721237 | 0.87[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3514400 | chr1:179349344-179400533 | Enhancers Active TSS ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
2 | esv3514401 | chr1:179349344-179400533 | Weak transcription Enhancers ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
3 | esv3451112 | chr1:179352344-179400533 | Enhancers ZNF genes & repeats Weak transcription Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
4 | esv1819329 | chr1:179371973-179442337 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
5 | nsv466217 | chr1:179371973-179477921 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
6 | nsv548297 | chr1:179371973-179477921 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
7 | nsv548298 | chr1:179376896-179436288 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:179391600-179394800 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
2 | chr1:179393600-179394600 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |