Variant report

Variant	rs11805875
Chromosome Location	chr1:179498291-179498292
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179497716..179500017-chr1:179555604..179558025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227141	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10494519	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10913824	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10913830	0.88[CEU][hapmap]
rs10913831	0.88[CEU][hapmap]
rs11799534	1.00[CEU][hapmap]
rs11799973	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11801024	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11802834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11803472	1.00[CEU][hapmap]
rs11805319	0.85[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11806287	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11808359	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11809095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11811313	1.00[CEU][hapmap]
rs12070589	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs16828724	1.00[CEU][hapmap]
rs16854006	1.00[CEU][hapmap]
rs17369441	1.00[CEU][hapmap]
rs1854336	0.88[EUR][1000 genomes]
rs2209923	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2209924	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689186	1.00[CEU][hapmap]
rs6698734	0.81[EUR][1000 genomes]
rs6698746	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6701343	0.81[EUR][1000 genomes]
rs67908894	0.88[EUR][1000 genomes]
rs68054120	0.85[EUR][1000 genomes]
rs72704407	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704408	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704416	0.92[EUR][1000 genomes]
rs72704426	0.92[EUR][1000 genomes]
rs72704429	0.92[EUR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704431	0.92[EUR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706703	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706705	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706706	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706707	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706708	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706709	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72717527	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs72719259	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72721234	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72721237	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7520266	1.00[CEU][hapmap]
rs7554967	1.00[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11805875	SOAT1	cis	multi-tissue	Pritchard

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179486400-179499600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:179486600-179499600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:179487200-179515000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:179494200-179498400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:179497000-179499600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:179497200-179498400	Enhancers	H9 Cell Line	embryonic stem cell
7	chr1:179497200-179498800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:179497200-179499200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr1:179497200-179499200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr1:179497400-179498600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:179497400-179498600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:179498000-179499200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr1:179498200-179498600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
14	chr1:179498200-179498600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr1:179498200-179498600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell

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