Variant report

Variant	rs11803472
Chromosome Location	chr1:179357352-179357353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10494519	1.00[CEU][hapmap]
rs11799534	1.00[CEU][hapmap]
rs11799973	0.85[CEU][hapmap]
rs11801024	1.00[AFR][1000 genomes]
rs11802378	1.00[AFR][1000 genomes]
rs11802834	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11805319	0.85[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11805875	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11807230	1.00[AFR][1000 genomes]
rs11807253	1.00[AFR][1000 genomes]
rs11808359	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs11809032	1.00[AFR][1000 genomes]
rs11809095	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs16828724	1.00[CEU][hapmap]
rs16854006	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17369441	1.00[CEU][hapmap]
rs2209923	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs2209924	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs28914473	1.00[AFR][1000 genomes]
rs28991582	1.00[AFR][1000 genomes]
rs60890328	0.87[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72704468	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72709477	1.00[AFR][1000 genomes]
rs72709479	1.00[AFR][1000 genomes]
rs72709481	1.00[AFR][1000 genomes]
rs72709485	1.00[AFR][1000 genomes]
rs72709486	1.00[AFR][1000 genomes]
rs72709487	1.00[AFR][1000 genomes]
rs72709488	1.00[AFR][1000 genomes]
rs72709490	1.00[AFR][1000 genomes]
rs72709492	1.00[AFR][1000 genomes]
rs72709493	1.00[AFR][1000 genomes]
rs72709494	1.00[AFR][1000 genomes]
rs72709495	1.00[AFR][1000 genomes]
rs72709497	1.00[AFR][1000 genomes]
rs72711608	1.00[AFR][1000 genomes]
rs72711609	1.00[AFR][1000 genomes]
rs72711612	1.00[AFR][1000 genomes]
rs72711615	1.00[AFR][1000 genomes]
rs72713484	1.00[AFR][1000 genomes]
rs72713485	1.00[AFR][1000 genomes]
rs72713494	1.00[AFR][1000 genomes]
rs72715506	1.00[AFR][1000 genomes]
rs72715515	1.00[AFR][1000 genomes]
rs72715520	1.00[AFR][1000 genomes]
rs72715533	1.00[AFR][1000 genomes]
rs72715595	1.00[AFR][1000 genomes]
rs72715597	1.00[AFR][1000 genomes]
rs72715599	1.00[AFR][1000 genomes]
rs72717511	0.87[EUR][1000 genomes]
rs72717517	0.92[EUR][1000 genomes]
rs72717520	0.92[EUR][1000 genomes]
rs72717523	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72717527	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72717535	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72717536	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72719259	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv2762031	chr1:179323738-179375197	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
3	nsv518403	chr1:179323919-179371973	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	nsv548279	chr1:179323919-179390148	Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv3514400	chr1:179349344-179400533	Enhancers Active TSS ZNF genes & repeats Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3514401	chr1:179349344-179400533	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3451112	chr1:179352344-179400533	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv523087	chr1:179352736-179371973	ZNF genes & repeats Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11803472	SOAT1	cis	multi-tissue	Pritchard

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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