Variant report

Variant	rs11802834
Chromosome Location	chr1:179486222-179486223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179477575..179481033-chr1:179483963..179487085,3	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10494519	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11799973	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11801024	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11805319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11805875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11806287	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11808359	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11809095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1854336	0.85[EUR][1000 genomes]
rs2209923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2209924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67908894	0.85[EUR][1000 genomes]
rs68054120	0.83[EUR][1000 genomes]
rs72704407	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72704408	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72704416	0.95[EUR][1000 genomes]
rs72704426	0.95[EUR][1000 genomes]
rs72704429	0.95[EUR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72704431	0.95[EUR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72704468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72706703	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706705	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706706	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706707	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706708	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72706709	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72717527	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72719259	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72721234	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72721237	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11802834	SOAT1	cis	multi-tissue	Pritchard

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179485400-179486800	Enhancers	Stomach Mucosa	stomach
2	chr1:179485800-179486400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:179485800-179486400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr1:179485800-179486800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr1:179486200-179486400	Active TSS	Duodenum Mucosa	Duodenum
6	chr1:179486200-179486600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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