Variant report

Variant	rs72704468
Chromosome Location	chr1:179493835-179493836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10494519	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10913824	0.81[EUR][1000 genomes]
rs11799973	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11801024	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11802834	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11805319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11805875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11806287	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11808359	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11809095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12070589	0.81[EUR][1000 genomes]
rs1854336	0.88[EUR][1000 genomes]
rs2209923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2209924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6698734	0.81[EUR][1000 genomes]
rs6698746	0.81[EUR][1000 genomes]
rs6701343	0.81[EUR][1000 genomes]
rs67908894	0.88[EUR][1000 genomes]
rs68054120	0.85[EUR][1000 genomes]
rs72704407	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704408	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704416	0.92[EUR][1000 genomes]
rs72704426	0.92[EUR][1000 genomes]
rs72704429	0.92[EUR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704431	0.92[EUR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706703	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706705	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706706	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706707	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706708	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706709	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72717527	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs72719259	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72721234	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72721237	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179486400-179499600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:179486600-179499600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:179487200-179515000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr1:179493600-179494000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:179493600-179494200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr1:179493800-179494000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr1:179493800-179494200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr1:179493800-179494200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr1:179493800-179494200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:179493800-179494200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr1:179493800-179498000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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