Variant report

Variant	rs72719259
Chromosome Location	chr1:179414468-179414469
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179414237..179416318-chr1:179560640..179562488,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000162782	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10494519	0.90[EUR][1000 genomes]
rs11799973	0.82[AMR][1000 genomes]
rs11801024	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11802834	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11805319	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11805875	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11806287	0.90[EUR][1000 genomes]
rs11807230	1.00[AFR][1000 genomes]
rs11807253	1.00[AFR][1000 genomes]
rs11808359	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs11809032	1.00[AFR][1000 genomes]
rs11809095	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2209923	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2209924	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704407	0.90[EUR][1000 genomes]
rs72704408	0.90[EUR][1000 genomes]
rs72704416	0.90[EUR][1000 genomes]
rs72704426	0.90[EUR][1000 genomes]
rs72704429	0.90[EUR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704431	0.90[EUR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704468	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72706703	1.00[AFR][1000 genomes]
rs72706706	1.00[AFR][1000 genomes]
rs72706707	1.00[AFR][1000 genomes]
rs72706708	1.00[AFR][1000 genomes]
rs72706709	1.00[AFR][1000 genomes]
rs72711608	1.00[AFR][1000 genomes]
rs72711609	1.00[AFR][1000 genomes]
rs72711612	1.00[AFR][1000 genomes]
rs72711615	1.00[AFR][1000 genomes]
rs72713484	1.00[AFR][1000 genomes]
rs72713485	1.00[AFR][1000 genomes]
rs72713494	1.00[AFR][1000 genomes]
rs72715506	1.00[AFR][1000 genomes]
rs72715515	1.00[AFR][1000 genomes]
rs72715520	1.00[AFR][1000 genomes]
rs72715533	1.00[AFR][1000 genomes]
rs72715595	1.00[AFR][1000 genomes]
rs72715597	1.00[AFR][1000 genomes]
rs72715599	1.00[AFR][1000 genomes]
rs72717523	0.82[AMR][1000 genomes]
rs72717527	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72717536	0.80[EUR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72721234	0.90[EUR][1000 genomes]
rs72721237	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1819329	chr1:179371973-179442337	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv548298	chr1:179376896-179436288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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