Variant report

Variant	rs72706709
Chromosome Location	chr1:179553046-179553047
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr1:179552940-179553090	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:179552689..179555177-chr1:179784126..179786720,2	K562	blood:
2	chr1:179553040..179558877-chr1:179559940..179564416,7	MCF-7	breast:
3	chr1:179546057..179548837-chr1:179552198..179554818,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227141	TF binding region
ENSG00000229407	Chromatin interaction
ENSG00000162782	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10913824	1.00[EUR][1000 genomes]
rs10913825	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10913830	0.85[EUR][1000 genomes]
rs11799973	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11801024	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11802834	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11805051	0.85[EUR][1000 genomes]
rs11805319	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11805875	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11807084	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11808359	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11809095	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs11809475	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11811313	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11811588	0.89[EUR][1000 genomes]
rs12070589	1.00[EUR][1000 genomes]
rs12072884	0.95[EUR][1000 genomes]
rs12085410	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12086806	0.95[EUR][1000 genomes]
rs12086891	0.95[EUR][1000 genomes]
rs17278862	0.89[EUR][1000 genomes]
rs1854336	0.88[EUR][1000 genomes]
rs2209923	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2209924	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs66623346	0.89[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6698734	1.00[EUR][1000 genomes]
rs6698746	1.00[EUR][1000 genomes]
rs6701343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67908894	0.88[EUR][1000 genomes]
rs68054120	0.86[EUR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72704468	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72706703	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72706705	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72706706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72706707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72706708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72706712	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706713	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706714	0.95[EUR][1000 genomes]
rs72706715	0.85[EUR][1000 genomes]
rs72706716	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706717	0.85[EUR][1000 genomes]
rs72706730	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706745	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706782	0.91[EUR][1000 genomes]
rs72706784	0.91[EUR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes]
rs72719259	1.00[AFR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179552400-179553400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr1:179552400-179553800	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:179552600-179553200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr1:179552600-179553200	Enhancers	Brain Germinal Matrix	brain
5	chr1:179552800-179553200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
6	chr1:179552800-179553400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:179552800-179553600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr1:179553000-179553200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell

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