Variant report

Variant	rs6698746
Chromosome Location	chr1:179563058-179563059
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179553040..179558877-chr1:179559940..179564416,7	MCF-7	breast:
2	chr1:179561671..179563939-chr1:179566117..179567690,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000227141	Chromatin interaction

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10494519	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs10798697	0.94[AFR][1000 genomes]
rs10913824	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10913825	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10913830	0.91[ASW][hapmap];0.88[CEU][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10913831	0.88[CEU][hapmap];0.86[YRI][hapmap]
rs10913839	1.00[MEX][hapmap]
rs11799534	1.00[CEU][hapmap]
rs11799973	0.85[CEU][hapmap];0.91[EUR][1000 genomes]
rs11801024	0.91[EUR][1000 genomes]
rs11805051	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11805319	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs11805875	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11807084	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11808359	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11809475	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11811313	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11811588	0.89[EUR][1000 genomes]
rs12025031	1.00[MEX][hapmap]
rs12070589	0.91[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12072884	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12085410	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12086806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12086891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12128834	1.00[MEX][hapmap]
rs12566427	0.91[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.86[YRI][hapmap]
rs16828724	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs17278862	0.89[EUR][1000 genomes]
rs17369441	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs1854336	0.88[EUR][1000 genomes]
rs2209923	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs2209924	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs66623346	0.89[EUR][1000 genomes]
rs6682308	0.81[EUR][1000 genomes]
rs6689186	1.00[CEU][hapmap]
rs6698734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6701343	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6704505	1.00[MEX][hapmap]
rs67908894	0.88[EUR][1000 genomes]
rs68054120	0.86[EUR][1000 genomes]
rs72704464	0.81[EUR][1000 genomes]
rs72704465	0.81[EUR][1000 genomes]
rs72704468	0.81[EUR][1000 genomes]
rs72706703	0.91[EUR][1000 genomes]
rs72706705	0.91[EUR][1000 genomes]
rs72706706	0.91[EUR][1000 genomes]
rs72706707	0.91[EUR][1000 genomes]
rs72706708	0.91[EUR][1000 genomes]
rs72706709	1.00[EUR][1000 genomes]
rs72706712	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706713	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706715	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72706716	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706717	0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72706730	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706745	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72706782	0.91[EUR][1000 genomes]
rs72706784	0.91[EUR][1000 genomes]
rs7520266	1.00[CEU][hapmap];0.80[YRI][hapmap]
rs7554967	1.00[CEU][hapmap];0.92[YRI][hapmap]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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