Variant report

Variant	rs6704505
Chromosome Location	chr1:179600001-179600002
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10798697	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10798707	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs10913824	1.00[MEX][hapmap]
rs10913830	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.83[ASN][1000 genomes]
rs10913831	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913834	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10913835	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10913836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10913837	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs10913838	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10913839	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10913851	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs11804670	1.00[JPT][hapmap]
rs11805051	0.83[ASN][1000 genomes]
rs11811313	1.00[MEX][hapmap]
rs12025031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12030594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12032339	1.00[ASN][1000 genomes]
rs12038691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs12041396	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs12041941	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs12042195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12044010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs12047528	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12070589	1.00[MEX][hapmap];0.85[MKK][hapmap]
rs12128834	1.00[MEX][hapmap]
rs12565481	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12565489	0.83[ASN][1000 genomes]
rs12566427	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.90[TSI][hapmap]
rs12566750	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4133262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6698746	1.00[MEX][hapmap]
rs72706715	0.83[ASN][1000 genomes]
rs72706717	0.83[ASN][1000 genomes]
rs72706762	1.00[ASN][1000 genomes]
rs72706766	1.00[ASN][1000 genomes]
rs72706786	1.00[ASN][1000 genomes]
rs7549026	1.00[CHB][hapmap]
rs8179491	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013000	chr1:179589193-179628536	Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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