Variant report
| Variant | rs4133262 |
|---|---|
| Chromosome Location | chr1:179596575-179596576 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000057252 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs10798697 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs10913830 | 0.96[ASN][1000 genomes] |
| rs11805051 | 0.96[ASN][1000 genomes] |
| rs12032339 | 0.87[ASN][1000 genomes] |
| rs12047528 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12121642 | 0.87[ASN][1000 genomes] |
| rs12565489 | 0.96[ASN][1000 genomes] |
| rs4604656 | 0.86[ASN][1000 genomes] |
| rs6677476 | 0.83[ASN][1000 genomes] |
| rs72706715 | 0.96[ASN][1000 genomes] |
| rs72706717 | 0.96[ASN][1000 genomes] |
| rs72706762 | 0.87[ASN][1000 genomes] |
| rs72706766 | 0.87[ASN][1000 genomes] |
| rs72706786 | 0.87[ASN][1000 genomes] |
| rs7549026 | 0.87[ASN][1000 genomes] |
| rs8179491 | 0.87[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013000 | chr1:179589193-179628536 | Enhancers Weak transcription Bivalent Enhancer | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
