Variant report
| Variant | rs7549026 |
|---|---|
| Chromosome Location | chr1:179556848-179556849 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000162782 | Chromatin interaction |
| ENSG00000116218 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10798697 | 0.91[ASN][1000 genomes] |
| rs10798707 | 1.00[CHB][hapmap] |
| rs10913830 | 1.00[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs10913831 | 1.00[CHB][hapmap] |
| rs10913834 | 1.00[CHB][hapmap] |
| rs10913835 | 1.00[CHB][hapmap] |
| rs10913836 | 1.00[CHB][hapmap] |
| rs10913837 | 1.00[CHB][hapmap] |
| rs10913838 | 1.00[CHB][hapmap] |
| rs10913839 | 1.00[CHB][hapmap] |
| rs10913851 | 1.00[CHB][hapmap] |
| rs11805051 | 0.91[ASN][1000 genomes] |
| rs12025031 | 1.00[CHB][hapmap] |
| rs12030594 | 1.00[CHB][hapmap] |
| rs12038691 | 1.00[CHB][hapmap] |
| rs12041396 | 1.00[CHB][hapmap] |
| rs12041941 | 1.00[CHB][hapmap] |
| rs12042195 | 1.00[CHB][hapmap] |
| rs12044010 | 1.00[CHB][hapmap] |
| rs12047528 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs12121642 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12565481 | 1.00[CHB][hapmap] |
| rs12565489 | 0.91[ASN][1000 genomes] |
| rs12566427 | 1.00[CHB][hapmap] |
| rs12566750 | 1.00[CHB][hapmap];0.85[YRI][hapmap] |
| rs1410586 | 1.00[JPT][hapmap] |
| rs2274624 | 1.00[JPT][hapmap] |
| rs3818587 | 1.00[JPT][hapmap] |
| rs4133262 | 0.87[ASN][1000 genomes] |
| rs4604656 | 0.82[ASN][1000 genomes] |
| rs6677468 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6677476 | 0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6704505 | 1.00[CHB][hapmap] |
| rs72706715 | 0.91[ASN][1000 genomes] |
| rs72706717 | 0.91[ASN][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs7549026 | TDRD5 | cis | Artery Tibial | GTEx |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:179556000-179560600 | Weak transcription | Right Atrium | heart |
| 2 | chr1:179556200-179558200 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
