Variant report

Variant	rs72706703
Chromosome Location	chr1:179547168-179547169
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr1:179547099-179547218	H1-hESC	embryonic stem cell:	n/a	n/a
2	NFYB	chr1:179546989-179547187	GM12878	blood:	n/a	n/a
3	MAFK	chr1:179547088-179547171	H1-hESC	embryonic stem cell:	n/a	chr1:179547090-179547104 chr1:179547089-179547105

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179546057..179548837-chr1:179552198..179554818,2	MCF-7	breast:

Variant related genes	Relation type
NPHS2	TF binding region

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10494519	0.82[EUR][1000 genomes]
rs10913824	0.91[EUR][1000 genomes]
rs10913825	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11799973	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11801024	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11802834	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11805319	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11805875	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11806287	0.82[EUR][1000 genomes]
rs11807084	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11808359	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11809095	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11809475	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11811313	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12070589	0.91[EUR][1000 genomes]
rs12072884	0.86[EUR][1000 genomes]
rs12085410	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12086806	0.86[EUR][1000 genomes]
rs12086891	0.86[EUR][1000 genomes]
rs1854336	0.97[EUR][1000 genomes]
rs2209923	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2209924	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6682308	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6698734	0.91[EUR][1000 genomes]
rs6698746	0.91[EUR][1000 genomes]
rs6701343	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs67908894	0.97[EUR][1000 genomes]
rs68054120	0.95[EUR][1000 genomes]
rs72704407	0.82[EUR][1000 genomes]
rs72704408	0.82[EUR][1000 genomes]
rs72704416	0.82[EUR][1000 genomes]
rs72704426	0.82[EUR][1000 genomes]
rs72704429	0.82[EUR][1000 genomes]
rs72704430	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704431	0.82[EUR][1000 genomes]
rs72704457	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs72704464	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704465	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72704468	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72706705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706707	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706708	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72706709	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72706712	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706713	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706714	0.86[EUR][1000 genomes]
rs72706716	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706730	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706745	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72706782	0.81[EUR][1000 genomes]
rs72706784	0.81[EUR][1000 genomes]
rs72719210	1.00[AFR][1000 genomes]
rs72719259	1.00[AFR][1000 genomes]
rs72721234	0.82[EUR][1000 genomes]
rs72721237	0.82[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179547000-179547600	Bivalent Enhancer	Fetal Kidney	kidney

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