Variant report

Variant	rs72704416
Chromosome Location	chr1:179454379-179454380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179452715..179454955-chr1:179456900..179459797,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000269064	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10494519	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11799973	0.82[EUR][1000 genomes]
rs11801024	0.82[EUR][1000 genomes]
rs11802834	0.95[EUR][1000 genomes]
rs11805319	0.92[EUR][1000 genomes]
rs11805875	0.92[EUR][1000 genomes]
rs11806287	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11808359	0.82[EUR][1000 genomes]
rs11809095	1.00[EUR][1000 genomes]
rs1854336	0.80[EUR][1000 genomes]
rs2209923	0.92[EUR][1000 genomes]
rs2209924	0.92[EUR][1000 genomes]
rs6682308	0.92[EUR][1000 genomes]
rs67908894	0.80[EUR][1000 genomes]
rs72704407	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704408	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704426	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704429	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704430	1.00[EUR][1000 genomes]
rs72704431	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72704457	1.00[EUR][1000 genomes]
rs72704464	0.92[EUR][1000 genomes]
rs72704465	0.92[EUR][1000 genomes]
rs72704468	0.92[EUR][1000 genomes]
rs72706703	0.82[EUR][1000 genomes]
rs72706705	0.82[EUR][1000 genomes]
rs72706706	0.82[EUR][1000 genomes]
rs72706707	0.82[EUR][1000 genomes]
rs72706708	0.82[EUR][1000 genomes]
rs72719210	0.87[EUR][1000 genomes]
rs72719259	0.90[EUR][1000 genomes]
rs72721234	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72721237	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466217	chr1:179371973-179477921	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv548297	chr1:179371973-179477921	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1009624	chr1:179423063-179459676	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
4	nsv1011557	chr1:179426390-179459460	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
5	nsv548299	chr1:179452695-179456776	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv548300	chr1:179452695-179457436	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3320859	chr1:179453629-179458627	Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179454000-179454400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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